机构:[1]Department of Breast Surgery, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China浙江大学医学院附属第一医院[2]Department of Oncology, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China[3]Breast Center Department, The Fourth Hospital of Hebei Medical University, Hebei Medical University, Shijiazhuang, China河北医科大学第四医院[4]Department of Medical Oncology, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China浙江大学医学院附属第一医院[5]Department of Clinical Research, The First Affiliated Hospital of Jinan University, Guangzhou, China
Importance Breast cancer (BC), a common malignant tumor, ranks first among cancers in terms of morbidity and mortality among female patients. Currently, identifying effective prognostic models has a significant association with the prediction of the overall survival of patients with BC and guidance of clinicians in early diagnosis and treatment. Objectives To identify a potential DNA repair-related prognostic signature through a comprehensive evaluation and to further improve the accuracy of prediction of the overall survival of patients with BC. Design, Setting, and Participants In this prognostic study, conducted from October 9, 2019, to February 3, 2020, the gene expression profiles and clinical data of patients with BC were collected from The Cancer Genome Atlas database. This study consisted of a training set from The Cancer Genome Atlas database and 2 validation cohorts from the Gene Expression Omnibus, which included 1096 patients with BC. A prognostic signature based on 8 DNA repair-related genes (DRGs) was developed to predict overall survival among female patients with BC. Main Outcomes and Measures Primary screening prognostic biomarkers were analyzed using univariate Cox proportional hazards regression analysis and the least absolute shrinkage and selection operator Cox proportional hazards regression. A risk model was completely established through multivariate Cox proportional hazards regression analysis. Finally, a prognostic nomogram, combining the DRG signature and clinical characteristics of patients, was constructed. To examine the potential mechanisms of the DRGs, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were performed. Results In this prognostic study based on samples from 1096 women with BC (mean [SD] age, 59.6 [13.1] years), 8 DRGs (MDC1, RPA3, MED17, DDB2, SFPQ, XRCC4, CYP19A1, and PARP3) were identified as prognostic biomarkers. The time-dependent receiver operating characteristic curve analysis suggested that the 8-gene signature had a good predictive accuracy. In the training cohort, the areas under the curve were 0.708 for 3-year survival and 0.704 for 5-year survival. In the validation cohort, the areas under the curve were 0.717 for 3-year survival and 0.772 for 5-year survival in thedata set and 0.691 for 3-year survival and 0.718 for 5-year survival in thedata set. This DRG signature mainly involved some regulation pathways of vascular endothelial cell proliferation. Conclusions and Relevance In this study, a prognostic signature using 8 DRGs was developed that successfully predicted overall survival among female patients with BC. This risk model provides new clinical evidence for the diagnostic accuracy and targeted treatment of BC.
基金:
In this prognostic study based
on samples from 1096 women, a novel
signature for breast cancer constructed
using 8 DNA repair–related genes
showed satisfactory performance for
predicting survival in the training cohort
from The Cancer Genome Atlas and the
validation cohort from the Gene
Expression Omnibus database. The DNA
repair–related gene signature was an
independent predictor of survival after
adjustment for clinical characteristics.
第一作者机构:[1]Department of Breast Surgery, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China[2]Department of Oncology, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
共同第一作者:
通讯作者:
通讯机构:[1]Department of Breast Surgery, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China[5]Department of Clinical Research, The First Affiliated Hospital of Jinan University, Guangzhou, China[*1]Department of Breast Surgery, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou 310003, China[*2]Department of Clinical Research, The First Affiliated Hospital of Jinan University, Guangzhou 510632, China
推荐引用方式(GB/T 7714):
Zhang Dai,Yang Si,Li Yiche,et al.Prediction of Overall Survival Among Female Patients With Breast Cancer Using a Prognostic Signature Based on 8 DNA Repair-Related Genes[J].JAMA Network Open.2020,3(10):doi:10.1001/jamanetworkopen.2020.14622.
APA:
Zhang, Dai,Yang, Si,Li, Yiche,Yao, Jia,Ruan, Jian...&Dai, Zhijun.(2020).Prediction of Overall Survival Among Female Patients With Breast Cancer Using a Prognostic Signature Based on 8 DNA Repair-Related Genes.JAMA Network Open,3,(10)
MLA:
Zhang, Dai,et al."Prediction of Overall Survival Among Female Patients With Breast Cancer Using a Prognostic Signature Based on 8 DNA Repair-Related Genes".JAMA Network Open 3..10(2020)