资源类型:
期刊
WOS体系:
Article
Pubmed体系:
Journal Article
收录情况:
◇ SCIE
文章类型:
论著
机构:
[1]Department of Vascular Surgery, Hebei Provincial People's Hospital, Shijiazhuang, 050000, China.
[2]The Fourth Hospital of Hebei Medical University Gynecology, Shijiazhuang, 050000, China
河北医科大学第四医院
妇科
临床科室
ISSN:
1755-8794
关键词:
Atherosclerosis
RNA-Seq
Diferentially expressed genes
Enrichment analysis
Immune
摘要:
More and more evidence has established the crucial roles of the innate and adaptive immune systems in driving atherosclerosis-associated chronic inflammation in arterial blood vessels. Thus, the goal of this research was to determine immune-related biomarkers in atherosclerosis.In this study, we conducted analysis on the mRNA expression profile of atherosclerosis obtained from Gene Expression Omnibus. Differentially expressed genes (DEGs) between atherosclerosis and control samples and immune-related genes (IRGs) were intersected to obtain differentially expressed immune-related genes (DEIRGs). The protein-protein interaction (PPI) network was created by STRING database and hub genes were identified by the MCODE plug-in. Furthermore, the receiver operating characteristic (ROC) curve was executed to verify the diagnostic value of the hub genes, and microRNA (miRNA)-gene-transcription factor (TF) regulatory networks were used to explain the regulatory mechanism of hub genes in atherosclerosis. Finally, qRT-PCR was performed to identify the mRNA levels of the target genes.A total of 199 overlapping genes were screened out as DEIRGs by intersecting the DEGs and IRGs. Then, 6 hub genes with high diagnostic value (IFIH1, IFIT1, IFIT2, IFIT3, ISG15 and OAS3) were identified via PPI network and ROC curve. Finally, miRNA-gene-TF networks revealed the regulatory mechanism of diagnostic genes.We used the carotid artery of AS patients and normal human carotid artery plaque samples for qRT-PCR verification, and the results showed that the hub gene had the same trend.Our study identified IFIH1, IFIT1, IFIT2, IFIT3, ISG15 and OAS3 as immune-related hub genes of atherosclerosis. These genes may serve as potential therapeutic targets for atherosclerosis patients.© 2022. The Author(s).
被引次数:
5
WOS:
WOS:000889061100001
PubmedID:
36437453
中科院分区:
出版当年[2022]版:
大类
|
3 区
医学
小类
|
3 区
遗传学
最新[2025]版:
大类
|
4 区
医学
小类
|
4 区
遗传学
JCR分区:
出版当年[2022]版:
Q3
GENETICS & HEREDITY
最新[2024]版:
Q3
GENETICS & HEREDITY
影响因子:
2
最新[2024版]
2.4
最新五年平均
2.7
出版当年[2022版]
3.2
出版当年五年平均
3.622
出版前一年[2021版]
2.1
出版后一年[2023版]
第一作者:
Dong Ruoyu
第一作者机构:
[1]Department of Vascular Surgery, Hebei Provincial People's Hospital, Shijiazhuang, 050000, China.
通讯作者:
Shi Xiaoming
推荐引用方式(GB/T 7714):
Dong Ruoyu,Jiang Guangwei,Tian Yunjie,et al.Identification of immune-related biomarkers and construction of regulatory network in patients with atherosclerosis[J].BMC MEDICAL GENOMICS.2022,15(1):doi:10.1186/s12920-022-01397-4.
APA:
Dong Ruoyu,Jiang Guangwei,Tian Yunjie&Shi Xiaoming.(2022).Identification of immune-related biomarkers and construction of regulatory network in patients with atherosclerosis.BMC MEDICAL GENOMICS,15,(1)
MLA:
Dong Ruoyu,et al."Identification of immune-related biomarkers and construction of regulatory network in patients with atherosclerosis".BMC MEDICAL GENOMICS 15..1(2022)