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Identification of biomarkers for the diagnosis and treatment of primary colorectal cancer based on microarray technology

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机构: [1]First Hosp Shijiazhuang, Gen Surg Dept, Ward 1, Shijiazhuang 050011, Hebei, Peoples R China [2]Dezhou Peoples Hosp, Dept Gastrointestinal Surg, Dezhou 253000, Peoples R China [3]Peking Univ, Sch Basic Med, Beijing 100191, Peoples R China [4]Hebei Univ Technol, Sch Artificial Intelligence, Tianjin 300401, Peoples R China [5]Beijing Hosp, Natl Ctr Gerontol, Dept Surg, Beijing 100730, Peoples R China [6]Tongji Univ, Shanghai Peoples Hosp 10, Sch Med, Dept Breast & Thyroid Surg, Shanghai 200072, Peoples R China [7]Tianjin Med Univ, Canc Inst & Hosp, Dept Biotherapy, Tianjin 300060, Peoples R China [8]Chinese Acad Med Sci & Peking Union Med Coll, Grad Sch, Beijing 100730, Peoples R China [9]Beijing Hosp, Natl Ctr Gerontol, Neurol Dept, Beijing 100730, Peoples R China [10]Hebei Med Univ, Hosp 4, Dept Med Oncol, 12 Jiankang Rd, Shijiazhuang 050000, Hebei, Peoples R China
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关键词: Primary colorectal cancer (PCRC) differentially expressed genes gene set enrichment analysis (GSEA) hub genes

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Background: Primary colorectal cancer (PCRC) is one of the most common malignant tumors in clinic, and is characterized by high heterogeneity occurring between tumors and intracellularly. Therefore, this study aimed to explore potential gene targets for the diagnosis and treatment of PCRC via bioinformatic technology. Methods: Gene Expression Omnibus (GEO) was used to download the data used in this study. Differently expressed genes (DEGs) were identified with GEO2R, and the gene set enrichment analysis (GSEA) was implemented for enrichment analysis. Then, the researchers constructed a protein-protein interaction (PPI) network, a significant module, and a hub genes network. Results: The GSE81558 dataset was downloaded, and a total of 97 DEGs were found. There were 23 upregulated DEGs and 74 down-regulated DEGs in the PCRC samples, compared with the control group. The PPI network included a total of 42 nodes and 63 edges. One module network consisted of 11 nodes and 25 edges. Another module network consisted of 4 nodes and 6 edges. The hub genes network was created by cytoHubba using GCG, GUCA2B, CLCA4, ZG16, TMIGD1, GUCA2A, CHGA, PYY, SST, and MS4A12. Conclusions: Ten hub genes were found from the genomic samples of patients with PCRC and normal controls by bioinformatics analysis. The hub genes might provide novel ideas and evidence for the diagnosis and targeted therapy of PCRC.

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出版当年[2020]版:
大类 | 4 区 医学
小类 | 4 区 肿瘤学
最新[2025]版:
大类 | 4 区 医学
小类 | 4 区 肿瘤学
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出版当年[2020]版:
Q4 ONCOLOGY
最新[2023]版:
Q4 ONCOLOGY

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第一作者机构: [1]First Hosp Shijiazhuang, Gen Surg Dept, Ward 1, Shijiazhuang 050011, Hebei, Peoples R China
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通讯机构: [10]Hebei Med Univ, Hosp 4, Dept Med Oncol, 12 Jiankang Rd, Shijiazhuang 050000, Hebei, Peoples R China [*1]Department of Medical Oncology, The Fourth Hospital of Hebei Medical University, 12 Jiankang Road, Shijiazhuang 050000, China.
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