资源类型:
期刊
WOS体系:
Article
Pubmed体系:
Journal Article
收录情况:
◇ SCIE
文章类型:
论著
机构:
[1]Department of nephrology, The Fourth Hospital of Hebei Medical University, Jian Kang Road, Shijiazhuang, Hebei Province 050000, China
临床科室
肾内科
河北医科大学第四医院
[2]Department of urology, Affiliated Hospital of Sergeant School of Army Medical University, 346 Shengli North Street, Shijiazhuang, Hebei Province 050047, China
ISSN:
0966-3274
关键词:
Diabetic nephropathy
Cuproptosis
Immune microenvironment
Metabolic disorders
摘要:
The cuproptosis is an intracellular copper (Cu) accumulation triggering the aggregation of mitochondrial lipoylated proteins and destabilization of iron‑sulfur (FeS) cluster proteins, leading to cell death. This copper-triggered modality of mitochondrial cell death has been associated with cuproptosis-related signature key genes (CRGs). Our study focused on the relationship between the cuproptosis CRGs and diabetic nephropathy (DN) to understand how such immune microenvironment may influence DN.We downloaded and compared RNA sequencing data sets of DN glomerular tissue samples vs. normal renal tissue samples (GSE142025, GSE30528, and GSE96804) from Gene Expression Omnibus (GEO) database. Differentially expressed genes (DEGs) between DN and control samples were screened. Immune cell subtypes infiltration and immune score were figured out via different algorithms. Consensus clustering was performed by the Ward's method to determine different phenotypes of DN. CRG key genes between two phenotypes were identified via machine learning algorithm. Logistic regression analysis was applied to establish a nomogram for assessing the risk of DN.In DN samples, two genes NLRP3 and CDKN2A were positively correlated to the immune score. In contrast, six genes NFE2L2, LIAS, LIPT1, DLD, DBT and DLST were negatively correlated to the immune score. Via Consensus clustering based on cuproptosis CRG key genes, the DN samples were divided into cluster C1 and cluster C2. The cluster C1 was characterized by low cuproptosis CRG genes expression, high immune cell subtypes infiltration, and high enrichment of immune-related pathways. Cluster C2 was on the contrary, the Dicarbonyl/l-xylulose reductase (DCXR) and heat-responsive protein 12 (HRSP12) genes were related to clinical traits and the immune microenvironment, negatively correlated with most immune cell subtypes. The nomogram was constructed based on DCXR and HRSP12 showing good efficiency for the DN diagnosis.We conclude that the immune microenvironment imbalance and metabolic disorders lead to the occurrence of DN. The signature cuproptosis genes, regulating the immune microenvironment and metabolism, represented the DN disease clustering to describe the heterogeneity and characterize immune microenvironment. Both HRSP12 and DCXR key genes are related to DN disease phenotypes and immune microenvironment characteristic and may help in DN diagnosis.Copyright © 2025. Published by Elsevier B.V.
基金:
Hebei Medical Science Research Key Project, No: 20221236. Project of Sergeant School of Army Medical University, No: 2020XJ-10.
WOS:
WOS:001427560200001
PubmedID:
39892769
中科院分区:
出版当年[2025]版:
大类
|
4 区
医学
小类
|
4 区
免疫学
4 区
移植
最新[2025]版:
大类
|
4 区
医学
小类
|
4 区
免疫学
4 区
移植
JCR分区:
出版当年[2023]版:
Q3
TRANSPLANTATION
Q4
IMMUNOLOGY
最新[2023]版:
Q3
TRANSPLANTATION
Q4
IMMUNOLOGY
影响因子:
1.6
最新[2023版]
1.5
最新五年平均
1.6
出版当年[2025版]
1.5
出版当年五年平均
0
出版前一年[2024版]
第一作者:
Guo Liping
第一作者机构:
[1]Department of nephrology, The Fourth Hospital of Hebei Medical University, Jian Kang Road, Shijiazhuang, Hebei Province 050000, China
共同第一作者:
Liu Fei
通讯作者:
Lu Fan
推荐引用方式(GB/T 7714):
Guo Liping,Liu Fei,Li Hui,et al.Cuproptosis gene characterizes the immune microenvironment of diabetic nephropathy[J].Transplant Immunology.2025,89:102175.doi:10.1016/j.trim.2025.102175.
APA:
Guo Liping,Liu Fei,Li Hui,Yuan Yingying&Lu Fan.(2025).Cuproptosis gene characterizes the immune microenvironment of diabetic nephropathy.Transplant Immunology,89,
MLA:
Guo Liping,et al."Cuproptosis gene characterizes the immune microenvironment of diabetic nephropathy".Transplant Immunology 89.(2025):102175